Datasets from Loss of Ezh2 in the medial ganglionic eminence alters interneuron fate, cell morphology and gene expression profiles (Rhodes CJ et al., Frontiers Cell Neurosci 2024)

GSE233151 → snRNA-seq of E12.5 and E15.5 MGE from Nkx2.1-Cre;Ezh2 WT, Het and Hom mouse (1 replicate each)   
GSE233152 → snATAC-seq of E12.5 and E15.5 MGE from Nkx2.1-Cre;Ezh2 WT, Het and Hom mouse (1 replicate each)  
GSE233153 → SuperSeries containing ALL of the above snRNA-seq and snATAC-seq files (GSE233151 and GSE233152)  
GSE233190 → H3K27me3 CUT&Tag of E12.5 and E15.5 MGE from Nkx2.1-Cre;Ezh2 WT, Het and Hom mouse (3 replicates each)

Datasets from Transcriptional Heterogeneity of ventricular zone cell in the ganglionic eminences of the mouse forebrain (Lee DR et al., eLife 2022):

GSE167013 → scRNA-seq of E12.5 WT MGE, LGE, CGE and cortex (1 replicate each)   
GSE190593 → scRNA-seq of E12.5 Nes-dVenus MGE, LGE, CGE (2 replicates each) and cortex (1 replicate),   
scRNA-seq of E14.5 Nes-dVenus MGE, LGE and CGE (1 replicate), and   
scRNA-seq of E14.5 WT MGE, LGE and CGE (1 replicate)

Datasets from An epigenome atlas of neural progenitors within the embryonic mouse forebrain (Rhodes CJ et al., Nat Comm 2022)

** All of the data described in this manuscript is publicly available in a searchable format on the UCSC Genome Browser and can be found at this link:  Embryonic Mouse Brain Epigenome Atlas **

GSE167013 → scRNA-seq of E12.5 WT MGE, LGE, CGE and cortex (1 replicate each)   
GSE167016 → snRNA-seq of P30 Dlx6aCre;Sun1-GFP cortex and hippocampus (1 replicate each)   
GSE167047 → snATAC-seq of E12.5 WT MGE, LGE, CGE and cortex (2 replicates each)   
GSE167048 → snATAC-seq of P30 Dlx6aCre;Sunq-GFP cortex and hippocampus (2 replicates each)   
GSE167050 → ALL of the above RNA-seq and ATAC-Seq files (GSE167013, 167016, 167047, 167048)   
GSE201487 → H3K4me3 CUT&Tag of E12.5 WT MGE, LGE, CGE and cortex (2 replicates each)   
GSE201488 → H3K27me3 CUT&Tag of E12.5 WT MGE, LGE, CGE and cortex (2 replicates each)   
GSE201400 → H3K27ac CUT&RUN of E12.5 WT MGE, LGE, CGE and cortex (2 replicates each)   
GSE201494 → ALL of the above Cut&Tag and CUT&RUN data   
GSE201186 → Hi-C of E12.5 WT MGE, LGE, CGE and cortex (2 replicates each)   
GSE201317 → Capture-C of E12.5 WT MGE, LGE, CGE and cortex (2 replicates each)